Quality assessment parameters for EST-derived SNPs from catfish

Mining SNPs from EST databases.

There is considerable interest in the discovery and characterization of single nucleotide polymorphisms (SNPs) to enable the analysis of the potential relationships between human genotype and phenotype. Here we present a strategy that permits the rapid discovery of SNPs from publicly available expressed sequence tag (EST) databases. From a set of ESTs derived from 19 different cDNA libraries, w...

Characterization and development of EST-SSR markers derived from transcriptome of yellow catfish.

Yellow catfish (Pelteobagrus fulvidraco) is one of the most important freshwater fish due to its delicious flesh and high nutritional value. However, lack of sufficient simple sequence repeat (SSR) markers has hampered the progress of genetic selection breeding and molecular research for yellow catfish. To this end, we aimed to develop and characterize polymorphic expressed sequence tag (EST)-S...

Mining SNPs from EST sequences using filters and ensemble classifiers.

Abundant single nucleotide polymorphisms (SNPs) provide the most complete information for genome-wide association studies. However, due to the bottleneck of manual discovery of putative SNPs and the inaccessibility of the original sequencing reads, it is essential to develop a more efficient and accurate computational method for automated SNP detection. We propose a novel computational method t...

SNPs for breast cancer risk assessment

Assessment of Water Quality Parameters: A Review

Water is the most important in shaping the land and regulating the climate. It is one of the most important compounds that profoundly influence life. The quality of water usually described according to its physical, chemical and biological characteristics. Rapid industrialization and indiscriminate use of chemical fertilizers and pesticides in agriculture are causing heavy and varied pollution ...